All modules for which code is available

• hstrat.frozen_instrumentation._HereditaryStratigraphicAssemblage
• hstrat.frozen_instrumentation._HereditaryStratigraphicAssemblageSpecimen
• hstrat.frozen_instrumentation._HereditaryStratigraphicSpecimen
• hstrat.genome_instrumentation._HereditaryStratigraphicColumn
• hstrat.genome_instrumentation._HereditaryStratigraphicColumnBundle
• hstrat.genome_instrumentation._HereditaryStratigraphicSurface
• hstrat.genome_instrumentation._HereditaryStratum
• hstrat.genome_instrumentation.stratum_ordered_stores._HereditaryStratumOrderedStoreDict
• hstrat.genome_instrumentation.stratum_ordered_stores._HereditaryStratumOrderedStoreList
• hstrat.genome_instrumentation.stratum_ordered_stores._HereditaryStratumOrderedStoreTree
• hstrat.phylogenetic_inference.estimators._estimate_rank_of_mrca_maximum_likelihood
• hstrat.phylogenetic_inference.estimators._estimate_rank_of_mrca_naive
• hstrat.phylogenetic_inference.estimators._estimate_rank_of_mrca_unbiased
• hstrat.phylogenetic_inference.priors._ArbitraryPrior
• hstrat.phylogenetic_inference.priors._ExponentialPrior
• hstrat.phylogenetic_inference.priors._GeometricPrior
• hstrat.phylogenetic_inference.priors._UniformPrior
• hstrat.phylogenetic_inference.tree.trie_postprocess._AssignDestructionTimeYoungestPlusOneTriePostprocessor
• hstrat.phylogenetic_inference.tree.trie_postprocess._AssignOriginTimeExpectedValueTriePostprocessor
• hstrat.phylogenetic_inference.tree.trie_postprocess._AssignOriginTimeNaiveTriePostprocessor
• hstrat.phylogenetic_inference.tree.trie_postprocess._AssignOriginTimeNodeRankTriePostprocessor
• hstrat.phylogenetic_inference.tree.trie_postprocess._AssignOriginTimeSampleNaiveTriePostprocessor
• hstrat.phylogenetic_inference.tree.trie_postprocess._CompoundTriePostprocessor
• hstrat.phylogenetic_inference.tree.trie_postprocess._NopTriePostprocessor
• hstrat.phylogenetic_inference.tree.trie_postprocess._PeelBackConjoinedLeavesTriePostprocessor
• hstrat.phylogenetic_inference.tree.trie_postprocess._SampleAncestralRollbacksTriePostprocessor
• hstrat.stratum_retention_strategy.stratum_retention_algorithms._impl._CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms._impl._CalcMrcaUncertaintyRelUpperBoundAtPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._invar._CalcMrcaUncertaintyAbsUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._invar._CalcMrcaUncertaintyRelUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._invar._CalcNumStrataRetainedUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._scry._CalcMrcaUncertaintyAbsExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._scry._CalcNumStrataRetainedExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._scry._CalcRankAtColumnIndex
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_algo._scry._IterRetainedRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._invar._CalcMrcaUncertaintyAbsUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._invar._CalcMrcaUncertaintyRelUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._invar._CalcNumStrataRetainedUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._scry._CalcMrcaUncertaintyAbsExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._scry._CalcNumStrataRetainedExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._scry._CalcRankAtColumnIndex
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.depth_proportional_resolution_tapered_algo._scry._IterRetainedRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._invar._CalcMrcaUncertaintyAbsUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._invar._CalcMrcaUncertaintyRelUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._invar._CalcNumStrataRetainedUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._scry._CalcMrcaUncertaintyAbsExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._scry._CalcNumStrataRetainedExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._scry._CalcRankAtColumnIndex
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.fixed_resolution_algo._scry._IterRetainedRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._invar._CalcMrcaUncertaintyAbsUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._invar._CalcMrcaUncertaintyRelUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._invar._CalcNumStrataRetainedUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._scry._CalcMrcaUncertaintyAbsExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._scry._CalcNumStrataRetainedExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._scry._CalcRankAtColumnIndex
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_algo._scry._IterRetainedRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._invar._CalcMrcaUncertaintyAbsUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._invar._CalcMrcaUncertaintyRelUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._invar._CalcNumStrataRetainedUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._scry._CalcMrcaUncertaintyAbsExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._scry._CalcNumStrataRetainedExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._scry._CalcRankAtColumnIndex
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.geom_seq_nth_root_tapered_algo._scry._IterRetainedRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.nominal_resolution_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.nominal_resolution_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.nominal_resolution_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.nominal_resolution_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.nominal_resolution_algo._invar._CalcNumStrataRetainedUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.nominal_resolution_algo._scry._CalcMrcaUncertaintyAbsExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.nominal_resolution_algo._scry._CalcNumStrataRetainedExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.nominal_resolution_algo._scry._CalcRankAtColumnIndex
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.nominal_resolution_algo._scry._IterRetainedRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._invar._CalcMrcaUncertaintyAbsUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._invar._CalcMrcaUncertaintyRelUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._invar._CalcNumStrataRetainedUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._scry._CalcMrcaUncertaintyAbsExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._scry._CalcNumStrataRetainedExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._scry._CalcRankAtColumnIndex
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.perfect_resolution_algo._scry._IterRetainedRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.pseudostochastic_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.pseudostochastic_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.pseudostochastic_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.pseudostochastic_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._invar._CalcMrcaUncertaintyAbsUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._invar._CalcMrcaUncertaintyRelUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._invar._CalcNumStrataRetainedUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._scry._CalcMrcaUncertaintyAbsExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._scry._CalcNumStrataRetainedExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_algo._scry._CalcRankAtColumnIndex
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_curbed_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_curbed_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_curbed_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_curbed_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_curbed_algo._invar._CalcNumStrataRetainedUpperBound
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_curbed_algo._scry._CalcMrcaUncertaintyAbsExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_curbed_algo._scry._CalcNumStrataRetainedExact
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_curbed_algo._scry._CalcRankAtColumnIndex
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.recency_proportional_resolution_curbed_algo._scry._IterRetainedRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.stochastic_algo._PolicySpec
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.stochastic_algo._enact._GenDropRanks_._GenDropRanks
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.stochastic_algo._invar._CalcMrcaUncertaintyAbsUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_algorithms.stochastic_algo._invar._CalcMrcaUncertaintyRelUpperBoundPessimalRank
• hstrat.stratum_retention_strategy.stratum_retention_policy_evaluators._MrcaUncertaintyAbsExactEvaluator
• hstrat.stratum_retention_strategy.stratum_retention_policy_evaluators._MrcaUncertaintyAbsUpperBoundEvaluator
• hstrat.stratum_retention_strategy.stratum_retention_policy_evaluators._MrcaUncertaintyRelExactEvaluator
• hstrat.stratum_retention_strategy.stratum_retention_policy_evaluators._MrcaUncertaintyRelUpperBoundEvaluator
• hstrat.stratum_retention_strategy.stratum_retention_policy_evaluators._NumStrataRetainedExactEvaluator
• hstrat.stratum_retention_strategy.stratum_retention_policy_evaluators._NumStrataRetainedUpperBoundEvaluator
• hstrat.stratum_retention_strategy.stratum_retention_policy_parameterizers._PropertyAtLeastParameterizer
• hstrat.stratum_retention_strategy.stratum_retention_policy_parameterizers._PropertyAtMostParameterizer
• hstrat.stratum_retention_strategy.stratum_retention_policy_parameterizers._PropertyExactlyParameterizer
• hstrat.test_drive.perfect_tracking._DecantingPhyloTracker
• hstrat.test_drive.perfect_tracking._GarbageCollectingPhyloTracker
• hstrat.test_drive.perfect_tracking._PerfectBacktrackHandle